SNP Profiles matching IMC 16

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 Key

 1234567891011121314
_Input profile
TTCCCCGTCTGGACCGAGCTAAGGAACC
1._RUQ_8
__ACGTCT_ACCGAGTT__AA_
2._IMC_11
__ACGTCT_ACCGAGTT__AA_
3._IMC_14
__ACGTCT_AC_AGTT__AA_
4._IMC_47
__CCGTCT_AC_AGTT__AA_
5._RUQ_11
___GTCT_ACCCAGCT__AA_
6._IMC_96
__CCGTCC_AC_AGCT__AA_
7._IMC_96
__CCGTCC_AC_AGCT__AA_
8._RUQ_8
TTCCACGTCTGGACCGAGTTAGGGAACC
9._RUQ_1634
TTCCACGTCTGGACCGAGTTAGGGAACC
10._RUQ_761
TTCCACGTCTGGACCGAGTTAGGGAACC
11._IMC_11
__ACGTCT_AACGAGTT__AA_
12._IMC_11
__ACGTCT_AACGAGTT__AA_
13._IMC_11
__ACGTCT_AACGAGTT__AA_
14._IMC_11
__ACGTCT_AACGAGTT__AA_
15._IMC_14
__ACGTCT_AACGAGTT__AA_
16._IMC_14
__ACGTCT_AACGAGTT__AA_
17._IMC_14
__ACGTCT_AACGAGTT__AA_
18._IMC_14
__ACGTCT_AACGAGTT__AA_
19._IMC_14
__ACGTCT_AACGAGTT__AA_
20._IMC_14
__ACGTCT_AACGAGTT__AA_
21._IMC_14
__ACGTCT_AACGAGTT__AA_
22._RUQ_11
TTCCCCGTCTGGACCCAGTTAGGGAACC
23._RUQ_1633
TTCCCCGTCTGGACCCAGTTAGGGAACC
24._IMC_11
__ACGTCT_AACGAGTT__AA_
25._IMC_14
__ACGTCT_AACGAGTT__AA_
26._IMC_14
__ACGTCT_AACGAGTT__AA_
27._IMC_14
__ACGTCT_AACGAGTT__AA_
28._IMC_14
__ACGTCT_AACGAGTT__AA_
29._IMC_14
__ACGTCT_AACGAGTT__AA_
30._IMC_14
__ACGTCT_AACGAGTT__AA_
31._RUQ_1678
TTCCCCGTCCGGAC-AGTTAAGGAACC
32._RUQ_1599
TTCCCCTTCCGGACCGAGTTAGGGAACC
 1516171819202122232425262728
_Input profile
AACCCTGTGGAACTCCTTGGGGTTACCC
1._RUQ_8
AACCCTGGGGAA_CC_GG___CC
2._IMC_11
AACCCTGGGGAA_CC_GG___CC
3._IMC_14
AACCCTGGGGAA_CC_GG___CC
4._IMC_47
AACCCTGTGGAA_CC_GG___CC
5._RUQ_11
AACCCTGTGGAA_CC_GG___CC
6._IMC_96
AACCCTGTGG__CC_GG___CC
7._IMC_96
AACCCTGTGG__CC_GG___CC
8._RUQ_8
AACCCTGGGGAACCCCTTGGGGTTACCC
9._RUQ_1634
AACCCTGGGGAACCCCTTGGGGTTACCC
10._RUQ_761
AACCCTGGGGAACCCCTTGGGGTTACCC
11._IMC_11
AACCCTGGGGAA_CC_GG___CC
12._IMC_11
AACCCTGGGGAA_CC_GG___CC
13._IMC_11
AACCCTGGGGAA_CC_GG___CC
14._IMC_11
AACCCTGGGGAA_CC_GG___CC
15._IMC_14
AACCCTGGGGAA_CC_GG___CC
16._IMC_14
AACCCTGGGGAA_CC_GG___CC
17._IMC_14
AACCCTGGGGAA_CC_GG___CC
18._IMC_14
AACCCTGGGGAA_CC_GG___CC
19._IMC_14
AACCCTGGGGAA_CC_GG___CC
20._IMC_14
AACCCTGGGGAA_CC_GG___CC
21._IMC_14
AACCCTGGGGAA_CC_GG___CC
22._RUQ_11
AACCCTGTGGAACCCCTTGGGGTTACCC
23._RUQ_1633
AACCCTGTGGAACCCCTTGGGGTTACCC
24._IMC_11
AA_CTGGGGAA_CC_GG___CC
25._IMC_14
AACCCTGGGGAA_CC_GG___CC
26._IMC_14
AACCCTGGGGAA_CC_GG___CC
27._IMC_14
AACCCTGGGGAA_CC_GG___CC
28._IMC_14
AACCCTGGGGAA_CC_GG___CC
29._IMC_14
AACCCTGGGGAA_CC_GG___CC
30._IMC_14
AACCCTGGGGAA_CC_GG___CC
31._RUQ_1678
AAACCCGT-ACCT-TT-GGTTACCC
32._RUQ_1599
AACCCTGTGGAACTCCTTGGGGTTAACC
 2930313233343536373839404142
_Input profile
CCCCAACCCTGGGGTTGTCTCCTTCGAG
1._RUQ_8
_CCAA_CT___GT__TTCGAG
2._IMC_11
_CCAA_CT___GT__TTCGAG
3._IMC_14
_CCAA_CT___GT__TTCGAG
4._IMC_47
_CTAA_CT___GT__TTGGAG
5._RUQ_11
_CTAA_CT___TT___CGAG
6._IMC_96
_CTAA_CT___TT__TTCGAG
7._IMC_96
_CTAA_CT___TT__TTCGAG
8._RUQ_8
CCCCAACCCTGGGGTTGTTTCCTTCGAG
9._RUQ_1634
CCCCAACCCTGGGGTTGTTTCCTTCGAG
10._RUQ_761
CCCCAACCCTGGGGTTGTTTCCTTCGAG
11._IMC_11
_CCAA_CT___GT__TTCGAG
12._IMC_11
_CCAA_CT___GT__TTCGAG
13._IMC_11
_CCAA_CT___GT__TTCGAG
14._IMC_11
_CCAA_CT___GT__TTCGAG
15._IMC_14
_CCAA_CT___GT__TTCGAG
16._IMC_14
_CCAA_CT___GT__TTCGAG
17._IMC_14
_CCAA_CT___GT__TTCGAG
18._IMC_14
_CCAA_CT___GT__TTCGAG
19._IMC_14
_CCAA_CT___GT__TTCGAG
20._IMC_14
_CCAA_CT___GT__TTCGAG
21._IMC_14
_CCAA_CT___GT__TTCGAG
22._RUQ_11
CCTTAACCCTGGGGTTTTCTCCTTCGAG
23._RUQ_1633
CCTTAACCCTGGGGTTTTCTCCTTCGAG
24._IMC_11
_CCAA_CT___GT__TTCGAG
25._IMC_14
_CCAA_CT______TTCGAG
26._IMC_14
_CCAA_CT______TTCGAG
27._IMC_14
_CCAA_CT______TTCGAG
28._IMC_14
_CCAA_CT______TTCGAG
29._IMC_14
_CCAA_CT______TTCGAG
30._IMC_14
_CCAA_CT______TTCGAG
31._RUQ_1678
-CC-CCCTGGGG-TT-CCTT--
32._RUQ_1599
CC-AACCCCGGGGTTGGTTCCTTCGAG

Input profile: IMC_16 RUQ_861

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._IMC_11 RUQ_8

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._IMC_11

93.8 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F423 T1
 Dapeng Zhang, 2016

3._IMC_14

93.5 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

4._IMC_47

93.5 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D242
 Dapeng Zhang, 2016

5._IMC_54 RUQ_11

93.2 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._IMC_96

93.2 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A46 T2
 Dapeng Zhang, 2016

7._IMC_96

93.2 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D562
 Dapeng Zhang, 2016

8._IMC_11 RUQ_8

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

9._IMC_14 RUQ_1634

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._IMC_6 RUQ_761

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._IMC_11

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 6 > FP
 Dapeng Zhang, 2016

12._IMC_11

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 1 > FP
 Dapeng Zhang, 2016

13._IMC_11

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 8
 Dapeng Zhang, 2016

14._IMC_11

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

15._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4318 4 > FP
 Dapeng Zhang, 2016

16._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 11
 Dapeng Zhang, 2016

17._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 9
 Dapeng Zhang, 2016

18._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 5
 Dapeng Zhang, 2016

19._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 3
 Dapeng Zhang, 2016

20._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 2
 Dapeng Zhang, 2016

21._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

22._IMC_54 RUQ_11

91.7 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._IMC_58 RUQ_1633

91.7 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

24._IMC_11

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 2 > FP
 Dapeng Zhang, 2016

25._IMC_14

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 16
 Dapeng Zhang, 2016

26._IMC_14

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 13
 Dapeng Zhang, 2016

27._IMC_14

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 12
 Dapeng Zhang, 2016

28._IMC_14

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 10
 Dapeng Zhang, 2016

29._IMC_14

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 6
 Dapeng Zhang, 2016

30._IMC_14

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 4
 Dapeng Zhang, 2016

31._IMC_78 RUQ_1678

90.6 %
32 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

32._EBC_148 RUQ_1599

90.2 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484